Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs55810147 chr16:85219628 C/T 3.67E-9 175 25.77 23.83 15 KM Plot
PCPG rs55825845 chr7:105166713 A/G 6.1E-5 177 20.2 28.95 2.28 KM Plot
PCPG rs55878652 chr2:241538061 T/C 0.000202 178 25.92 20.17 17.27 KM Plot
PCPG rs55880713 chr21:38503443 C/T 1.11E-16 174 24.7 25.63 3.17 KM Plot
PCPG rs55885765 chr2:236194064 A/C 2.27E-7 175 25.97 25.05 3.07 KM Plot
PCPG rs55892993 chr10:50525017 G/A 3.6E-6 176 24.52 35.5 25.17 KM Plot
PCPG rs55893551 chr2:241528927 G/A 3.68E-5 177 25.97 20.2 10.3 KM Plot
PCPG rs55906043 chr7:105165367 T/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs55918624 chr2:118694477 T/C 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs55922564 chr7:105155890 G/A 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs55949311 chr13:54131916 G/T 0.000227 177 25.67 19.87 3.17 KM Plot
PCPG rs55952217 chr16:89578141 T/C 0.000292 177 26.78 25.28 19.87 KM Plot
PCPG rs55955356 chr19:19675087 T/C 0.000465 178 25.67 27.2 20.25 KM Plot
PCPG rs55967123 chr7:105163678 C/A 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs55976923 chr2:241528968 G/C 3.68E-5 177 25.97 20.2 10.3 KM Plot